HL_6MWN_005

3D structure

PDB id

6MWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of hepatitis A virus IRES domain V in complex with Fab HAVx

Experimental method

X-RAY DIFFRACTION

Resolution

2.84 Å

Loop

Sequence

GCUGGAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MWN_005 not in the Motif Atlas

Homologous match to HL_6MWN_004

Geometric discrepancy: 0.3716

The information below is about HL_6MWN_004

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6MWN|1|A|G|650
6MWN|1|A|C|651
6MWN|1|A|U|652
6MWN|1|A|G|653
6MWN|1|A|G|654
6MWN|1|A|A|655
6MWN|1|A|C|656

Current chains

Chain A

HAV dV RNA (92-MER)

Nearby chains