HL_6N1D_005

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

6N1D|1|A16S|U|201|||A, 6N1D|1|A16S|U|201|||B, 6N1D|1|A16S|U|201|||C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_005 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1574

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6N1D|1|A16S|C|201
6N1D|1|A16S|U|201|||A
6N1D|1|A16S|U|201|||B
6N1D|1|A16S|U|201|||C
6N1D|1|A16S|G|216

Current chains

Chain A16S

16S rRNA

Nearby chains