HL_6N1D_020

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_020 not in the Motif Atlas

Homologous match to HL_5J7L_020

Geometric discrepancy: 0.17

The information below is about HL_5J7L_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6N1D|1|A16S|C|897
6N1D|1|A16S|G|898
6N1D|1|A16S|C|899
6N1D|1|A16S|A|900
6N1D|1|A16S|A|901
6N1D|1|A16S|G|902

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain A23S

Large subunit ribosomal RNA; LSU rRNA

Chain AS17

30S ribosomal protein S17