HL_6N1D_030
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUCAGCCAUGC
- Length
- 12 nucleotides
- Bulged bases
- 6N1D|1|A16S|C|1362|||A, 6N1D|1|A16S|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N1D_030 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.4832
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6N1D|1|A16S|G|1356
6N1D|1|A16S|A|1357
6N1D|1|A16S|U|1358
6N1D|1|A16S|C|1359
6N1D|1|A16S|A|1360
6N1D|1|A16S|G|1361
6N1D|1|A16S|C|1362
6N1D|1|A16S|C|1362|||A
6N1D|1|A16S|A|1363
6N1D|1|A16S|U|1364
6N1D|1|A16S|G|1365
6N1D|1|A16S|C|1366
Current chains
- Chain A16S
- 16S rRNA
Nearby chains
- Chain AS03
- 30S ribosomal protein S3
- Chain AS09
- 30S ribosomal protein S9
- Chain AS10
- 30S ribosomal protein S10
- Chain AS13
- 30S ribosomal protein S13
- Chain AS14
- 30S ribosomal protein S14 type Z
- Chain ATHX
- 30S ribosomal protein Thx
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