HL_6N1D_033
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UGGCUACCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N1D_033 not in the Motif Atlas
- Homologous match to HL_7A0S_001
- Geometric discrepancy: 0.1799
- The information below is about HL_7A0S_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6N1D|1|A23S|U|59
6N1D|1|A23S|G|60
6N1D|1|A23S|G|61
6N1D|1|A23S|C|62
6N1D|1|A23S|U|63
6N1D|1|A23S|A|64
6N1D|1|A23S|C|65
6N1D|1|A23S|C|66
6N1D|1|A23S|U|67
6N1D|1|A23S|G|68
Current chains
- Chain A23S
- 23S rRNA
Nearby chains
- Chain AL23
- 50S ribosomal protein L23
- Chain AL29
- 50S ribosomal protein L29
- Chain AL34
- 50S ribosomal protein L34
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