HL_6N1D_038

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6N1D|1|A23S|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_038 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.1408

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6N1D|1|A23S|G|194
6N1D|1|A23S|A|195
6N1D|1|A23S|A|196
6N1D|1|A23S|A|197
6N1D|1|A23S|C|198
6N1D|1|A23S|A|199
6N1D|1|A23S|U|200
6N1D|1|A23S|C|201

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL15

50S ribosomal protein L15

Chain AL28

50S ribosomal protein L28