HL_6N1D_039

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

6N1D|1|A23S|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_039 not in the Motif Atlas

Homologous match to HL_7A0S_007

Geometric discrepancy: 0.1376

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6N1D|1|A23S|A|225
6N1D|1|A23S|G|226
6N1D|1|A23S|A|227
6N1D|1|A23S|A|228
6N1D|1|A23S|A|229
6N1D|1|A23S|U|230

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL15

50S ribosomal protein L15