HL_6N1D_078

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

6N1D|1|A23S|A|1780, 6N1D|1|A23S|C|1781, 6N1D|1|A23S|C|1782, 6N1D|1|A23S|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_078 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.0976

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6N1D|1|A23S|U|1777
6N1D|1|A23S|U|1778
6N1D|1|A23S|U|1779
6N1D|1|A23S|A|1780
6N1D|1|A23S|C|1781
6N1D|1|A23S|C|1782
6N1D|1|A23S|A|1783
6N1D|1|A23S|A|1784
6N1D|1|A23S|A|1785
6N1D|1|A23S|A|1786
6N1D|1|A23S|A|1787

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL02

50S ribosomal protein L2

Chain AL22

50S ribosomal protein L22

Chain AL34

50S ribosomal protein L34