HL_6N1D_083

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6N1D|1|A23S|A|2030, 6N1D|1|A23S|A|2031, 6N1D|1|A23S|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_083 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.1539

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

6N1D|1|A23S|G|2027
6N1D|1|A23S|U|2028
6N1D|1|A23S|G|2029
6N1D|1|A23S|A|2030
6N1D|1|A23S|A|2031
6N1D|1|A23S|G|2032
6N1D|1|A23S|A|2033
6N1D|1|A23S|U|2034
6N1D|1|A23S|G|2035
6N1D|1|A23S|C|2036

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL03

50S ribosomal protein L3