HL_6N1D_087

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6N1D|1|A23S|A|2268, 6N1D|1|A23S|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_087 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.1612

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6N1D|1|A23S|C|2264
6N1D|1|A23S|U|2265
6N1D|1|A23S|A|2266
6N1D|1|A23S|A|2267
6N1D|1|A23S|A|2268
6N1D|1|A23S|A|2269
6N1D|1|A23S|G|2270
6N1D|1|A23S|G|2271
6N1D|1|A23S|U|2272
6N1D|1|A23S|A|2273
6N1D|1|A23S|A|2274
6N1D|1|A23S|C|2275
6N1D|1|A23S|G|2276

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL16

50S ribosomal protein L16

Chain AL27

50S ribosomal protein L27