HL_6N1D_106
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CCU(CM0)AC(6MZ)AG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: CM0, 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N1D_106 not in the Motif Atlas
- Homologous match to HL_4V9Q_214
- Geometric discrepancy: 0.3486
- The information below is about HL_4V9Q_214
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6N1D|1|APTN|C|31
6N1D|1|APTN|C|32
6N1D|1|APTN|U|33
6N1D|1|APTN|CM0|34
6N1D|1|APTN|A|35
6N1D|1|APTN|C|36
6N1D|1|APTN|6MZ|37
6N1D|1|APTN|A|38
6N1D|1|APTN|G|39
Current chains
- Chain APTN
- P-tRNA
Nearby chains
- Chain A16S
- Small subunit ribosomal RNA; SSU rRNA
- Chain AMRN
- mRNA
- Chain AS09
- 30S ribosomal protein S9
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