HL_6N1D_121

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

6N1D|1|B16S|U|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_121 not in the Motif Atlas

Homologous match to HL_6CZR_085

Geometric discrepancy: 0.2026

The information below is about HL_6CZR_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20554.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

6N1D|1|B16S|G|617
6N1D|1|B16S|C|618
6N1D|1|B16S|U|619
6N1D|1|B16S|C|620
6N1D|1|B16S|A|621
6N1D|1|B16S|A|622
6N1D|1|B16S|C|623

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BS04

30S ribosomal protein S4

Chain BS16

30S ribosomal protein S16