HL_6N1D_132

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6N1D|1|B16S|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_132 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.244

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6N1D|1|B16S|G|1089
6N1D|1|B16S|U|1090
6N1D|1|B16S|U|1091
6N1D|1|B16S|A|1092
6N1D|1|B16S|A|1093
6N1D|1|B16S|G|1094
6N1D|1|B16S|U|1095
6N1D|1|B16S|C|1096

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BS02

30S ribosomal protein S2

Chain BS07

30S ribosomal protein S7