HL_6N1D_151

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

6N1D|1|B23S|G|329, 6N1D|1|B23S|A|330, 6N1D|1|B23S|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_151 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1915

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6N1D|1|B23S|G|327
6N1D|1|B23S|U|328
6N1D|1|B23S|G|329
6N1D|1|B23S|A|330
6N1D|1|B23S|A|331
6N1D|1|B23S|A|332
6N1D|1|B23S|G|333
6N1D|1|B23S|C|334
6N1D|1|B23S|C|335

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL04

50S ribosomal protein L4

Chain BL24

50S ribosomal protein L24