HL_6N1D_165

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

6N1D|1|B23S|C|888

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_165 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.2829

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6N1D|1|B23S|C|884
6N1D|1|B23S|C|885
6N1D|1|B23S|C|886
6N1D|1|B23S|A|887
6N1D|1|B23S|C|888
6N1D|1|B23S|C|889
6N1D|1|B23S|A|890
6N1D|1|B23S|G|892

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BATN

Transfer RNA; tRNA

Chain BS19

30S ribosomal protein S19