HL_6N1D_172

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_172 not in the Motif Atlas

Homologous match to HL_7A0S_032

Geometric discrepancy: 0.1622

The information below is about HL_7A0S_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6N1D|1|B23S|G|1281
6N1D|1|B23S|U|1282
6N1D|1|B23S|G|1283
6N1D|1|B23S|A|1284
6N1D|1|B23S|G|1285
6N1D|1|B23S|A|1286
6N1D|1|B23S|A|1287
6N1D|1|B23S|U|1288
6N1D|1|B23S|C|1289

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL17

50S ribosomal protein L17

Chain BL22

50S ribosomal protein L22