HL_6N1D_188

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

6N1D|1|B23S|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_188 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1563

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6N1D|1|B23S|G|1910
6N1D|1|B23S|U|1911
6N1D|1|B23S|A|1912
6N1D|1|B23S|A|1913
6N1D|1|B23S|C|1914
6N1D|1|B23S|U|1915
6N1D|1|B23S|A|1916
6N1D|1|B23S|U|1917
6N1D|1|B23S|A|1918
6N1D|1|B23S|A|1919
6N1D|1|B23S|C|1920

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain B16S

Small subunit ribosomal RNA; SSU rRNA

Chain BATN

Transfer RNA; tRNA