3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGACGGAAAUC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6N1D_195 not in the Motif Atlas
Homologous match to HL_7A0S_054
Geometric discrepancy: 0.4607
The information below is about HL_7A0S_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_11805.4
Basepair signature
cWW-F-F-F-F-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

6N1D|1|B23S|G|2303
6N1D|1|B23S|G|2304
6N1D|1|B23S|A|2305
6N1D|1|B23S|C|2306
6N1D|1|B23S|G|2307
6N1D|1|B23S|G|2308
6N1D|1|B23S|A|2309
6N1D|1|B23S|A|2310
6N1D|1|B23S|A|2311
6N1D|1|B23S|U|2312
6N1D|1|B23S|C|2313

Current chains

Chain B23S
23S rRNA

Nearby chains

Chain B5S
5S ribosomal RNA; 5S rRNA
Chain BATN
Transfer RNA; tRNA
Chain BL05
50S ribosomal protein L5

Coloring options:


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