HL_6N1D_195

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_195 not in the Motif Atlas

Homologous match to HL_7A0S_054

Geometric discrepancy: 0.4607

The information below is about HL_7A0S_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6N1D|1|B23S|G|2303
6N1D|1|B23S|G|2304
6N1D|1|B23S|A|2305
6N1D|1|B23S|C|2306
6N1D|1|B23S|G|2307
6N1D|1|B23S|G|2308
6N1D|1|B23S|A|2309
6N1D|1|B23S|A|2310
6N1D|1|B23S|A|2311
6N1D|1|B23S|U|2312
6N1D|1|B23S|C|2313

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain B5S

5S ribosomal RNA; 5S rRNA

Chain BATN

Transfer RNA; tRNA

Chain BL05

50S ribosomal protein L5