HL_6N1D_197

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_197 not in the Motif Atlas

Homologous match to HL_7RQB_057

Geometric discrepancy: 0.1364

The information below is about HL_7RQB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

6N1D|1|B23S|C|2355
6N1D|1|B23S|C|2356
6N1D|1|B23S|U|2357
6N1D|1|B23S|G|2358
6N1D|1|B23S|C|2359
6N1D|1|B23S|A|2360
6N1D|1|B23S|A|2361
6N1D|1|B23S|G|2362

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL15

50S ribosomal protein L15

Chain BL27

50S ribosomal protein L27

Chain BL35

50S ribosomal protein L35