HL_6N1D_199

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

6N1D|1|B23S|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_199 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.135

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6N1D|1|B23S|C|2404
6N1D|1|B23S|G|2405
6N1D|1|B23S|U|2406
6N1D|1|B23S|G|2407
6N1D|1|B23S|U|2408
6N1D|1|B23S|G|2409
6N1D|1|B23S|G|2410
6N1D|1|B23S|A|2411
6N1D|1|B23S|A|2412
6N1D|1|B23S|G|2413

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL15

50S ribosomal protein L15

Chain BL28

50S ribosomal protein L28