3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUGUUCG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6N1D_202 not in the Motif Atlas
Homologous match to HL_4WF9_058
Geometric discrepancy: 0.2486
The information below is about HL_4WF9_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_48677.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
22

Unit IDs

6N1D|1|B23S|C|2551
6N1D|1|B23S|U|2552
6N1D|1|B23S|G|2553
6N1D|1|B23S|U|2554
6N1D|1|B23S|U|2555
6N1D|1|B23S|C|2556
6N1D|1|B23S|G|2557

Current chains

Chain B23S
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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