HL_6N1D_217
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CCU(CM0)AC(6MZ)AG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: CM0, 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N1D_217 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.2756
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6N1D|1|BPTN|C|31
6N1D|1|BPTN|C|32
6N1D|1|BPTN|U|33
6N1D|1|BPTN|CM0|34
6N1D|1|BPTN|A|35
6N1D|1|BPTN|C|36
6N1D|1|BPTN|6MZ|37
6N1D|1|BPTN|A|38
6N1D|1|BPTN|G|39
Current chains
- Chain BPTN
- P-tRNA
Nearby chains
- Chain B16S
- Small subunit ribosomal RNA; SSU rRNA
- Chain BATN
- Transfer RNA; tRNA
- Chain BMRN
- mRNA
- Chain BS09
- 30S ribosomal protein S9
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