HL_6N8J_014

3D structure

PDB id

6N8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUCUUGAAACAC

Length

12 nucleotides

Bulged bases

6N8J|1|1|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8J_014 not in the Motif Atlas

Geometric match to HL_4WSM_226

Geometric discrepancy: 0.3271

The information below is about HL_4WSM_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22031.2

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6N8J|1|1|G|639
6N8J|1|1|U|640
6N8J|1|1|C|641
6N8J|1|1|U|642
6N8J|1|1|U|643
6N8J|1|1|G|644
6N8J|1|1|A|645
6N8J|1|1|A|646
6N8J|1|1|A|647
6N8J|1|1|C|648
6N8J|1|1|A|649
6N8J|1|1|C|650

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain e

60S ribosomal protein L32