HL_6N8J_027

3D structure

PDB id

6N8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

6N8J|1|1|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8J_027 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.3186

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6N8J|1|1|C|1239
6N8J|1|1|A|1240
6N8J|1|1|U|1241
6N8J|1|1|G|1242
6N8J|1|1|G|1243
6N8J|1|1|A|1244
6N8J|1|1|A|1245
6N8J|1|1|G|1246
6N8J|1|1|U|1247
6N8J|1|1|C|1248
6N8J|1|1|G|1249

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain K

60S ribosomal protein L12

Chain b

Nucleolar GTP-binding protein 1

Chain m

Nucleolar GTP-binding protein 2