HL_6N8J_049

3D structure

PDB id

6N8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6N8J|1|1|A|2372, 6N8J|1|1|A|2373, 6N8J|1|1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8J_049 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.2071

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6N8J|1|1|G|2369
6N8J|1|1|G|2370
6N8J|1|1|G|2371
6N8J|1|1|A|2372
6N8J|1|1|A|2373
6N8J|1|1|C|2374
6N8J|1|1|G|2375
6N8J|1|1|G|2376
6N8J|1|1|G|2377
6N8J|1|1|C|2378

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain e

60S ribosomal protein L32