HL_6N8J_054
3D structure
- PDB id
- 6N8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUAAACGAUAACG
- Length
- 13 nucleotides
- Bulged bases
- 6N8J|1|1|A|2637, 6N8J|1|1|C|2644
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8J_054 not in the Motif Atlas
- Homologous match to HL_5TBW_055
- Geometric discrepancy: 0.1502
- The information below is about HL_5TBW_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
6N8J|1|1|U|2633
6N8J|1|1|U|2634
6N8J|1|1|A|2635
6N8J|1|1|A|2636
6N8J|1|1|A|2637
6N8J|1|1|C|2638
6N8J|1|1|G|2639
6N8J|1|1|A|2640
6N8J|1|1|U|2641
6N8J|1|1|A|2642
6N8J|1|1|A|2643
6N8J|1|1|C|2644
6N8J|1|1|G|2645
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain m
- Nucleolar GTP-binding protein 2
- Chain o
- 60S ribosomal protein L29
- Chain r
- Ribosome biogenesis protein NSA2
Coloring options: