HL_6N8J_057

3D structure

PDB id

6N8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUCAGUGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8J_057 not in the Motif Atlas

Homologous match to HL_8C3A_059

Geometric discrepancy: 0.131

The information below is about HL_8C3A_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34636.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6N8J|1|1|U|2724
6N8J|1|1|U|2725
6N8J|1|1|C|2726
6N8J|1|1|A|2727
6N8J|1|1|G|2728
6N8J|1|1|U|2729
6N8J|1|1|G|2730
6N8J|1|1|U|2731
6N8J|1|1|G|2732

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain Q

60S ribosomal protein L18-A

Chain q

60S ribosomal protein L42-A