HL_6N8J_082
3D structure
- PDB id
- 6N8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCUUGUG
- Length
- 7 nucleotides
- Bulged bases
- 6N8J|1|1|U|3195, 6N8J|1|1|U|3198
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8J_082 not in the Motif Atlas
- Homologous match to HL_8P9A_179
- Geometric discrepancy: 0.576
- The information below is about HL_8P9A_179
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08100.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6N8J|1|1|C|3193
6N8J|1|1|C|3194
6N8J|1|1|U|3195
6N8J|1|1|U|3196
6N8J|1|1|G|3197
6N8J|1|1|U|3198
6N8J|1|1|G|3199
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain H
- 60S ribosomal protein L9-A
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- 60S ribosomal protein L16-A
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