HL_6N8M_020

3D structure

PDB id

6N8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6N8M|1|A|U|879, 6N8M|1|A|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8M_020 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.1219

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6N8M|1|A|A|876
6N8M|1|A|C|877
6N8M|1|A|G|878
6N8M|1|A|U|879
6N8M|1|A|G|880
6N8M|1|A|C|881
6N8M|1|A|A|882
6N8M|1|A|A|883
6N8M|1|A|A|884
6N8M|1|A|U|885

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain c

60S ribosomal protein L17-A

Chain w

60S ribosomal protein L37-A