HL_6N8M_050

3D structure

PDB id

6N8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6N8M|1|A|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8M_050 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1409

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6N8M|1|A|U|2292
6N8M|1|A|C|2293
6N8M|1|A|U|2294
6N8M|1|A|A|2295
6N8M|1|A|A|2296
6N8M|1|A|U|2297
6N8M|1|A|U|2298
6N8M|1|A|A|2299
6N8M|1|A|G|2300

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain V

60S ribosomal export protein NMD3

Chain i

60S ribosomal protein L23-A