HL_6N8M_062
3D structure
- PDB id
- 6N8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGUUCAUAG
- Length
- 9 nucleotides
- Bulged bases
- 6N8M|1|A|U|2842
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8M_062 not in the Motif Atlas
- Homologous match to HL_8C3A_062
- Geometric discrepancy: 0.4956
- The information below is about HL_8C3A_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82661.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6N8M|1|A|C|2840
6N8M|1|A|G|2841
6N8M|1|A|U|2842
6N8M|1|A|U|2843
6N8M|1|A|C|2844
6N8M|1|A|A|2845
6N8M|1|A|U|2846
6N8M|1|A|A|2847
6N8M|1|A|G|2848
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain V
- 60S ribosomal export protein NMD3
- Chain Y
- Tyrosine-protein phosphatase YVH1
- Chain z
- Ubiquitin-60S ribosomal protein L40
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