HL_6N8N_031

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAUGAGAACUU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8N_031 not in the Motif Atlas

Geometric match to HL_5E81_236

Geometric discrepancy: 0.3508

The information below is about HL_5E81_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23827.2

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6N8N|1|A|A|1461
6N8N|1|A|A|1462
6N8N|1|A|U|1463
6N8N|1|A|G|1464
6N8N|1|A|A|1465
6N8N|1|A|G|1466
6N8N|1|A|A|1467
6N8N|1|A|A|1468
6N8N|1|A|C|1469
6N8N|1|A|U|1470
6N8N|1|A|U|1471

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain c

60S ribosomal protein L17-A

Chain e

60S ribosomal protein L19-A

Chain q

60S ribosomal protein L31-A