HL_6N8N_045

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

6N8N|1|A|A|2138, 6N8N|1|A|A|2139, 6N8N|1|A|U|2140, 6N8N|1|A|A|2144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8N_045 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.2131

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6N8N|1|A|U|2135
6N8N|1|A|C|2136
6N8N|1|A|U|2137
6N8N|1|A|A|2138
6N8N|1|A|A|2139
6N8N|1|A|U|2140
6N8N|1|A|U|2141
6N8N|1|A|A|2142
6N8N|1|A|A|2143
6N8N|1|A|A|2144
6N8N|1|A|A|2145

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain D

60S ribosomal protein L2-A

Chain w

60S ribosomal protein L37-A