HL_6N9F_172

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6N9F|1|2A|G|2751, 6N9F|1|2A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N9F_172 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1138

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

6N9F|1|2A|C|2745
6N9F|1|2A|U|2746
6N9F|1|2A|G|2747
6N9F|1|2A|A|2748
6N9F|1|2A|A|2749
6N9F|1|2A|A|2750
6N9F|1|2A|G|2751
6N9F|1|2A|C|2752
6N9F|1|2A|A|2753
6N9F|1|2A|U|2754
6N9F|1|2A|C|2755
6N9F|1|2A|U|2756
6N9F|1|2A|A|2757
6N9F|1|2A|A|2758
6N9F|1|2A|G|2759

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S Ribosomal Protein L36

Chain 2H

50S Ribosomal Protein L6

Chain 2N

50S Ribosomal Protein L13