HL_6ND5_206

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6ND5|1|2a|A|1092, 6ND5|1|2a|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ND5_206 not in the Motif Atlas

Homologous match to HL_5J7L_024

Geometric discrepancy: 0.2488

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6ND5|1|2a|G|1089
6ND5|1|2a|U|1090
6ND5|1|2a|U|1091
6ND5|1|2a|A|1092
6ND5|1|2a|A|1093
6ND5|1|2a|G|1094
6ND5|1|2a|U|1095
6ND5|1|2a|C|1096

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2g

30S ribosomal protein S7