HL_6NDK_056

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CCGAACAGG

Length

9 nucleotides

Bulged bases

6NDK|1|RA|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NDK_056 not in the Motif Atlas

Geometric match to HL_4V9F_032

Geometric discrepancy: 0.3256

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6NDK|1|RA|C|640
6NDK|1|RA|C|641
6NDK|1|RA|G|642
6NDK|1|RA|A|643
6NDK|1|RA|A|644
6NDK|1|RA|C|645
6NDK|1|RA|A|646
6NDK|1|RA|G|647
6NDK|1|RA|G|648

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R6

50S ribosomal protein L33

Chain R8

50S ribosomal protein L35

Chain RP

50S ribosomal protein L15