HL_6NDK_114

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

6NDK|1|XA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NDK_114 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.146

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6NDK|1|XA|G|259
6NDK|1|XA|G|260
6NDK|1|XA|U|261
6NDK|1|XA|A|262
6NDK|1|XA|A|263
6NDK|1|XA|U|264
6NDK|1|XA|G|265
6NDK|1|XA|G|266
6NDK|1|XA|C|267

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XQ

30S ribosomal protein S17

Chain XT

30S ribosomal protein S20