HL_6NDK_229
3D structure
- PDB id
- 6NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ASLSufA6 A37.5 bound to the 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- GGUGAGAAUCC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6NDK_229 not in the Motif Atlas
- Geometric match to HL_5E81_236
- Geometric discrepancy: 0.2841
- The information below is about HL_5E81_236
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_23827.2
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6NDK|1|YA|G|1280
6NDK|1|YA|G|1281
6NDK|1|YA|U|1282
6NDK|1|YA|G|1283
6NDK|1|YA|A|1284
6NDK|1|YA|G|1285
6NDK|1|YA|A|1286
6NDK|1|YA|A|1287
6NDK|1|YA|U|1288
6NDK|1|YA|C|1289
6NDK|1|YA|C|1290
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YR
- 50S ribosomal protein L17
- Chain YW
- 50S ribosomal protein L22
Coloring options: