HL_6NQB_026

3D structure

PDB id

6NQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Role of Era in Assembly and Homeostasis of the Ribosomal Small Subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCGCGAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NQB_026 not in the Motif Atlas

Geometric match to HL_4V88_215

Geometric discrepancy: 0.3911

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6NQB|1|A|U|1264
6NQB|1|A|C|1265
6NQB|1|A|G|1266
6NQB|1|A|C|1267
6NQB|1|A|G|1268
6NQB|1|A|A|1269
6NQB|1|A|G|1270
6NQB|1|A|A|1271

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain N

30S ribosomal protein S14