HL_6NUO_044

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

6NUO|1|RA|A|335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NUO_044 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1607

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

6NUO|1|RA|U|329
6NUO|1|RA|U|330
6NUO|1|RA|G|331
6NUO|1|RA|G|332
6NUO|1|RA|G|333
6NUO|1|RA|A|334
6NUO|1|RA|A|335
6NUO|1|RA|G|336

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RY

50S ribosomal protein L24