HL_6NUO_083

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

6NUO|1|RA|A|1935

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NUO_083 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1225

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6NUO|1|RA|G|1932
6NUO|1|RA|U|1933
6NUO|1|RA|A|1934
6NUO|1|RA|A|1935
6NUO|1|RA|C|1936
6NUO|1|RA|U|1937
6NUO|1|RA|A|1938
6NUO|1|RA|U|1939
6NUO|1|RA|A|1940
6NUO|1|RA|A|1941
6NUO|1|RA|C|1942

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain QV

Transfer RNA; tRNA