3D structure

PDB id
6NUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGCAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6NUO_134 not in the Motif Atlas
Homologous match to HL_4LFB_028
Geometric discrepancy: 0.0957
The information below is about HL_4LFB_028
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

6NUO|1|XA|G|1265
6NUO|1|XA|G|1266
6NUO|1|XA|C|1267
6NUO|1|XA|A|1268
6NUO|1|XA|A|1269
6NUO|1|XA|C|1270

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XM
30S ribosomal protein S13
Chain XS
30S ribosomal protein S19
Chain XU
30S ribosomal protein Thx

Coloring options:


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