HL_6NWY_029

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NWY_029 not in the Motif Atlas

Homologous match to HL_6CZR_100

Geometric discrepancy: 0.2588

The information below is about HL_6CZR_100

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.2

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6NWY|1|QA|C|1314
6NWY|1|QA|U|1315
6NWY|1|QA|G|1316
6NWY|1|QA|C|1317
6NWY|1|QA|A|1318
6NWY|1|QA|A|1319
6NWY|1|QA|C|1320
6NWY|1|QA|C|1321
6NWY|1|QA|C|1322
6NWY|1|QA|G|1323

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QM

30S ribosomal protein S13

Chain QN

30S ribosomal protein S14 type Z

Chain QS

30S ribosomal protein S19