HL_6O3M_128

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CGAAGCAACGCG

Length

12 nucleotides

Bulged bases

6O3M|1|XA|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O3M_128 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3366

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

6O3M|1|XA|C|962
6O3M|1|XA|G|963
6O3M|1|XA|A|964
6O3M|1|XA|A|965
6O3M|1|XA|G|966
6O3M|1|XA|C|967
6O3M|1|XA|A|968
6O3M|1|XA|A|969
6O3M|1|XA|C|970
6O3M|1|XA|G|971
6O3M|1|XA|C|972
6O3M|1|XA|G|973

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XI

30S ribosomal protein S9

Chain XJ

30S ribosomal protein S10

Chain XN

30S ribosomal protein S14 type Z

Chain XV

Transfer RNA; tRNA