HL_6O90_012

3D structure

PDB id

6O90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

6O90|1|A|G|366, 6O90|1|A|A|367, 6O90|1|A|A|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O90_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1583

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6O90|1|A|G|364
6O90|1|A|U|365
6O90|1|A|G|366
6O90|1|A|A|367
6O90|1|A|A|368
6O90|1|A|A|369
6O90|1|A|G|370
6O90|1|A|C|371
6O90|1|A|C|372

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24