HL_6O90_060

3D structure

PDB id

6O90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

AGUCCACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O90_060 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1671

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6O90|1|A|A|2485
6O90|1|A|G|2486
6O90|1|A|U|2487
6O90|1|A|C|2488
6O90|1|A|C|2489
6O90|1|A|A|2490
6O90|1|A|C|2491
6O90|1|A|A|2492
6O90|1|A|U|2493

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L36

Chain G

50S ribosomal protein L6