HL_6O9K_012

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6O9K|1|A|G|386, 6O9K|1|A|G|389

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O9K_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.2211

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6O9K|1|A|A|382
6O9K|1|A|C|383
6O9K|1|A|A|384
6O9K|1|A|C|385
6O9K|1|A|G|386
6O9K|1|A|U|387
6O9K|1|A|G|388
6O9K|1|A|G|389
6O9K|1|A|U|390
6O9K|1|A|A|391
6O9K|1|A|U|392

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28