HL_6O9K_045

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

6O9K|1|A|A|1780, 6O9K|1|A|U|1781, 6O9K|1|A|U|1782, 6O9K|1|A|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O9K_045 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.156

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6O9K|1|A|U|1777
6O9K|1|A|U|1778
6O9K|1|A|U|1779
6O9K|1|A|A|1780
6O9K|1|A|U|1781
6O9K|1|A|U|1782
6O9K|1|A|A|1783
6O9K|1|A|A|1784
6O9K|1|A|A|1785
6O9K|1|A|A|1786
6O9K|1|A|A|1787

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain 9

50S ribosomal protein L2