HL_6OF6_040

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUGGCAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OF6_040 not in the Motif Atlas

Geometric match to HL_5VPO_138

Geometric discrepancy: 0.2851

The information below is about HL_5VPO_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

6OF6|1|QY|A|32
6OF6|1|QY|U|33
6OF6|1|QY|G|34
6OF6|1|QY|G|35
6OF6|1|QY|C|36
6OF6|1|QY|A|37
6OF6|1|QY|U|38

Current chains

Chain QY

A-site tRNAAla(GGC)

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain QL

30S ribosomal protein S12

Chain QX

mRNA

Chain RA

Large subunit ribosomal RNA; LSU rRNA