3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGUAAGUUC
Length
9 nucleotides
Bulged bases
6OF6|1|YA|U|1955
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OF6_203 not in the Motif Atlas
Homologous match to HL_7A0S_048
Geometric discrepancy: 0.1656
The information below is about HL_7A0S_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_20167.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

6OF6|1|YA|G|1949
6OF6|1|YA|G|1950
6OF6|1|YA|U|1951
6OF6|1|YA|A|1952
6OF6|1|YA|A|1953
6OF6|1|YA|G|1954
6OF6|1|YA|U|1955
6OF6|1|YA|U|1956
6OF6|1|YA|C|1957

Current chains

Chain YA
23S rRNA

Nearby chains

Chain XA
Small subunit ribosomal RNA; SSU rRNA
Chain YO
50S ribosomal protein L14

Coloring options:


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